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Example clinical scenario

You review a newborn with supravalvular aortic stenosis. He was born small for gestational age and has marked epicanthic folds and full cheeks. He has hypercalcaemia.

When to consider genomic testing

A combination of the features listed below may raise a suspicion of Williams syndrome.

  • Facial features (which become more pronounced with age):
    • a face that is round in infancy but elongates over time;
    • epicanthic folds;
    • broad nasal bridge;
    • full cheeks;
    • prominent ears;
    • large mouth and thick lips;
    • widely spaced, underdeveloped teeth; and
    • stellate pattern to the iris.
  • Mild to moderate learning difficulties:
    • friendly, outgoing personality; and
    • short attention span and anxiety.
  • Cardiovascular disease (any artery may be narrowed):
    • supravalvar aortic stenosis (occurs in 75% of affected individuals); and
    • peripheral pulmonic stenosis (common in infancy).
  • Connective tissue anomalies (hernias, joint laxity, soft lax skin, bowel and/or bladder diverticulae and rectal prolapse).
  • Pre- and postnatal growth deficiency and persistent short stature.
  • Feeding difficulties, reflux and/or constipation.
  • Endocrine anomalies:
    • idiopathic hypercalcemia;
    • hypercalciuria;
    • hypothyroidism; and
    • early puberty.

What do you need to do?

  • Consult the National Genomic Test Directory. From here you can access the rare and inherited disease eligibility criteria, which provides information about individual tests and their associated eligibility criteria. You can also access a spreadsheet containing details of all available tests.
  • To find out which genes are included on different gene panels, see the NHS Genomic Medicine Service (GMS) Signed Off Panels Resource.
  • Decide which of the panels best suits the needs of your patient or family. Williams syndrome is caused by a microdeletion at chromosome position 7q11.23, which will be identified by a microarray. For a clinical suspicion of Williams syndrome, testing options include:
    • R28 Congenital malformation and dysmorphism syndromes (microarray only): This test is for any clinical features strongly suggestive of a chromosomal cause, including patients with features characteristic of Williams syndrome; and
    • R137 Congenital heart disease (microarray): This should be considered if a patient presents with tetralogy of Fallot, interrupted aortic arch or truncus arteriosus, or other forms of congenital heart disease with cleft palate and/or disorder of calcium homeostasis.
  • If microarray testing does not identify Williams syndrome, consider an alternative diagnosis. Options for further testing include:
    • R29 Intellectual disability: This should be considered if a child has global developmental delay or significant intellectual disability and you feel a monogenic cause is likely; and
    • R27 Paediatric disorders: This should be considered if there is developmental delay or intellectual disability in association with congenital malformation or overgrowth, and you would like to investigate chromosomal and single-gene causes.
  • For tests that are undertaken using whole genome sequencing (WGS), including R29 and R27, you will need to:
  • For tests that do not include WGS, including R28 and R137:
    • you can use your local Genomic Laboratory Hub test order and consent (RoD) forms; and
    • parental samples may be needed for interpretation of the child’s result. Parental samples can be taken alongside that of the child, and their DNA stored, or can be requested at a later date if needed.
  • The majority of tests are DNA-based, and an EDTA sample (purple-topped tube) is required. Exceptions include karyotype testing and DNA repair defect testing (for chromosome breakage), which require lithium heparin (green-topped tube).
  • R27 is a large WGS ‘super panel’ (a panel comprised of several different constituent panels forming one large panel), and requesting it currently requires authorisation from clinical genetics.
  • Information about patient eligibility and test indications was correct at the time of writing. When requesting a test, please refer to the National Genomic Test Directory to confirm the right test for your patient.

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For clinicians

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  • Last reviewed: 20/05/2024
  • Next review due: 20/05/2025
  • Authors: Dr Joanna Kennedy
  • Reviewers: Dr Danielle Bogue, Dr Amy Frost, Dr Eleanor Hay, Dr Emile Hendriks